Complete end-to-end permission flow for tool execution: - Add POST /api/permission/grant endpoint with gateway proxy - Add permission checks for list_dir, edit_file, append_file tools - Fix frontend PermissionPrompt to call grant API instead of chat messages - Add grantPermission() to frontend API client - Expose PermissionCache via AgentInstance for API access - Wire up permission grant callback through gateway to agent loop Inspired by opencode's permission system architecture.
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registry=https://registry.npmmirror.com/
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